PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099876001
Common NameGSBRNA2T00099876001, LOC106407538
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 453aa    MW: 51597.1 Da    PI: 6.6039
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099876001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-093704081854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  GSBRNA2T00099876001 370 MFQNflHPYPTDSEKHLLAIRSGLTRSQVSNWFINARVR 408
                          5887779******************************88 PP
2BELL88.66.8e-29245315172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r++l++kk++Ll+ll++Vd++Y+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  GSBRNA2T00099876001 245 QRRALEAKKTQLLDLLQMVDDKYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERISKKI 315
                          6899*****************************************.***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.7E-40176313IPR006563POX domain
PfamPF075269.8E-28181312IPR006563POX domain
PROSITE profilePS5007111.402349412IPR001356Homeobox domain
SMARTSM003894.1E-6352416IPR001356Homeobox domain
CDDcd000868.13E-11352413No hitNo description
SuperFamilySSF466892.01E-15353421IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-25355418IPR009057Homeodomain-like
PfamPF059205.1E-15369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDNDNTFSSL VSVMTNQNNL LMDLIPSRED STSFSTMLPW NSMRLDPLQM GGFDIFSSFL  60
TNKYLSSTSS SINVQENFEV MAPPPLPLPP FHHLDHLRPY DDSSNNMWSL GENSGFHAYS  120
YVEGVVGPSE PIASTFAEED VSDECSEISP YAATKMTSEQ ALTSEQASSS SKDIYNNVSH  180
VIFGSKYLHS VQEILSQFAT YSLHGLENNP QCYFSSQETE SRAAGSAFTS RLENQTEFVE  240
GGFDQRRALE AKKTQLLDLL QMVDDKYSHC VDEIHTVVSA FHAATELDPQ LHTRFALQTI  300
SFLYKNLRER ISKKILMMGS VLERGKEKSQ ENSIIHQHCL LQQMKHKNHQ IWRPQRGLPE  360
KSVSVLRTWM FQNFLHPYPT DSEKHLLAIR SGLTRSQVSN WFINARVRLW KPMIEDMYAE  420
MNKRKLNNTH LQGSGGSRRI PKSIMMTQER NK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-14358415562Homeobox protein Meis2
3k2a_B8e-14358415562Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099876001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013703863.10.0homeobox protein ATH1
RefseqXP_022561568.10.0homeobox protein ATH1
RefseqXP_022561569.10.0homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A3P6EM240.0A0A3P6EM24_BRAOL; Uncharacterized protein
STRINGBo7g115960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]