PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099835001 | ||||||||
Common Name | GSBRNA2T00099835001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 401aa MW: 45346 Da PI: 5.8167 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 309 | 342 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + GSBRNA2T00099835001 309 KWPYPTEEDKARLVEETGLQLKQINNWFINQRKR 342 569*****************************87 PP | |||||||
2 | ELK | 26.7 | 1.2e-09 | 263 | 284 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ GSBRNA2T00099835001 263 ELKHELKQGFKEKIVDIREEIM 284 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.3E-19 | 96 | 140 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-16 | 99 | 139 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.9E-25 | 146 | 202 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.0E-19 | 153 | 201 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.2E-4 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.446 | 263 | 283 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.1E-6 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.953 | 283 | 346 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-15 | 285 | 350 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.0E-10 | 285 | 350 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.44E-11 | 286 | 345 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 290 | 346 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-17 | 303 | 342 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSFNSSHLLP PQEDLPLRHY SSDQSHQPSL LTASFLHLPP TTATTDSEFT HPHRDGDSPA 60 AAATNRRWLS FHTEVENTEE VNPEVNADGV EDWKSASDKA AILKHPMYEQ LLAAHVACLR 120 VATPVDQIPR IDAQLSQLHT VAAKYSSLGV GMDNKELDHF MSHYVVVLCS FKEQLQHHVC 180 VHALEAITAC WEIEQSLQSI TGVSPSESNG KTMSDDDEDD NQVVESEVNM FDGSLDGSDC 240 MMGFGPLVPT ERERSLVERV KKELKHELKQ GFKEKIVDIR EEIMRKRRAG KLPGDTTSVL 300 KEWWRTHSKW PYPTEEDKAR LVEETGLQLK QINNWFINQR KRNWNSSSST SSTLSKSKRK 360 RLISSIYQTQ DWEVVGDILV NQRMMLASPD MKDMVSPPVM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 360 | RKRNWNSSSSTSSTLSKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14079 | 0.0 | flower| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099835001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352580 | 0.0 | AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593437.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 5 | ||||
Refseq | XP_013751300.1 | 0.0 | homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 0.0 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | A0A3P6F5S8 | 0.0 | A0A3P6F5S8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g115600.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32040.1 | 0.0 | KNOTTED1-like homeobox gene 5 |
Publications ? help Back to Top | |||
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