PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00099551001

Common Name

GSBRNA2T00099551001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 213aa MW: 24161.6 Da PI: 8.1771

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00099551001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.9	4.9e-22	50	98	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs ++y + GSBRNA2T00099551001 50 KEIQEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCERIYAF 98 67999*************************************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.35E-22	42	111	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.063	42	102	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.8E-26	42	101	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-20	44	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.2E-22	52	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-20	64	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-20	79	100	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MENGEASLTT CLPFKEQKPM QKPNLAVKQR NGRKQQNPKT TKGRQRIEIK EIQEENRRQV 60 TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN VNTLIESYLR KTPVMLRSYY 120 GGDVAAGVDG DGPMWWERAV ESVPEEEMDE YMKGLNVLRE NLWTRICEMG GDPTVQMNAQ 180 ICPDLMAPVN WKLMDENLAV RNDQGQAGYD GY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00099551001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189575	0.0	AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104862.1	1e-155	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_013651170.1	1e-155	agamous-like MADS-box protein AGL61
TrEMBL	A0A397YVN8	1e-157	A0A397YVN8_BRACM; Uncharacterized protein
STRING	Bra003884.1-P	1e-155	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	4e-72	M-type_MADS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]