PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00099379001 | ||||||||
Common Name | GSBRNA2T00099379001, LOC106346722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 180aa MW: 19473.5 Da PI: 5.617 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.2 | 3.7e-13 | 38 | 96 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rkq+NRe+ArrsR RK++ ++ L+ v L +eN + + ++++ ++++e+ GSBRNA2T00099379001 38 RKRKRKQSNRESARRSRMRKQQHLDDLAAQVTHLRKENGHFIAGIAVTTEHYVTMEAEN 96 5789**********************************998888887777777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-10 | 32 | 77 | No hit | No description |
SMART | SM00338 | 2.3E-17 | 34 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.404 | 36 | 75 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.7E-11 | 38 | 96 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.55E-11 | 38 | 92 | No hit | No description |
CDD | cd14702 | 4.97E-19 | 39 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNKTELGSPT SNSSVSTTGL LNSGSETDLQ QRDLLDERKR KRKQSNRESA RRSRMRKQQH 60 LDDLAAQVTH LRKENGHFIA GIAVTTEHYV TMEAENSILR AQLLELNHRL DSLNEIVDFV 120 ESSSFEMETG QGGGLVDYGG GGGGGGGGFY DGVMNTLNLG FYNQPIMASA STAGDVFNC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | RKRKRK |
2 | 50 | 57 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14235 | 5e-63 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00099379001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC023754 | 5e-31 | AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence. | |||
GenBank | AK318829 | 5e-31 | AK318829.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL14-51-H21. | |||
GenBank | AK318991 | 5e-31 | AK318991.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL21-81-N15. | |||
GenBank | BT004768 | 5e-31 | BT004768.1 Arabidopsis thaliana At1g75390 gene, complete cds. | |||
GenBank | CP002684 | 5e-31 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104708.1 | 1e-129 | PREDICTED: bZIP transcription factor 44-like | ||||
Refseq | XP_013641596.1 | 1e-129 | bZIP transcription factor 44 | ||||
Swissprot | C0Z2L5 | 8e-95 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | A0A397YNT9 | 1e-128 | A0A397YNT9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CHS2 | 1e-128 | M4CHS2_BRARP; Uncharacterized protein | ||||
STRING | Bra003755.1-P | 1e-129 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 1e-82 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Entrez Gene | 106346722 |
Publications ? help Back to Top | |||
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