PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00099320001

Common Name

GSBRNA2T00099320001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 339aa MW: 39821 Da PI: 7.7021

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00099320001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72	1.1e-22	66	150	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +W+ ++v+++i+ ++++e+ + ++k++W+ vs++m erg+++sp+qC++k+++lnkrykk++e+ +++t ++++++ +++d++ GSBRNA2T00099320001 66 KWMYKMVKLMITTLSYLDEDDHKH-ARKGKWRTVSEVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTcCDVVENPSLLDKI 150 7****************98776.899*****************************************857888888887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-19	64	177	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSDLGSNVMD RRQHKGFSLP FPLMTPSVHH NLPVTEYNNG HGWTSQEEDG DGHNKSKNSS 60 PWGRVKWMYK MVKLMITTLS YLDEDDHKHA RKGKWRTVSE VMDERGYHVS PQQCEDKFND 120 LNKRYKKLNE MLGRGTCCDV VENPSLLDKI GYLDEKEKDE VRKIMSSKHL FYEEMCSYHN 180 GNRLNLPHDP ALQRSLRIRC RDDDGHGKHQ NEDLVDCEEH NMSQMDCGDR GVSLGGALKR 240 LRRSQNHEDL GHPNHANKGY VPHLHKQWTE SKSLELEERK LQIQAELMEL ERQRIKWERF 300 SQKRDQKLQI MRMENENMKL ENEKMKLELR GVELGARF*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00242	DAP	Transfer from AT1G76870	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00099320001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189339	0.0	AC189339.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104656.1	0.0	PREDICTED: uncharacterized protein LOC103830595
Refseq	XP_013648723.1	0.0	uncharacterized protein BNAA07G21220D
TrEMBL	A0A397YV49	0.0	A0A397YV49_BRACM; Uncharacterized protein
TrEMBL	M4CHM1	0.0	M4CHM1_BRARP; Uncharacterized protein
STRING	Bra003704.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-109

Link Out ? help Back to Top
Entrez Gene	106353499

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]