PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00098991001 | ||||||||
Common Name | GSBRNA2T00098991001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 238aa MW: 27409.7 Da PI: 6.4499 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.5 | 1.3e-29 | 72 | 159 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p GSBRNA2T00098991001 72 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKESSGKWVITKFVKEHNHPLMP 159 9******************************************999..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-27 | 72 | 159 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGHNEMGESS GQAMIEQDDE NHNEIGEHSG EEMNLEQDEK VDPDSIPLEV ADMADEPFVG 60 QEFESEAAAH GFYNAYATKV GFVIRVSKLS RSRHDGSPIG RQLVCNKEGY RLPSKRDKVI 120 RQRAETRVGC RAMILIRKES SGKWVITKFV KEHNHPLMPG RVRRGCIYDQ YPNEHDKIQE 180 LMQQLAAEKK RAATYKRHLE MLFEHIEQHN EGLTKRIQHI VDNVRDLEQR DHQQNQV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25417 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00098991001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058089 | 0.0 | AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds. | |||
GenBank | AY143081 | 0.0 | AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104205.1 | 1e-177 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Refseq | XP_018508676.1 | 1e-177 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2 | ||||
TrEMBL | A0A397YX06 | 1e-176 | A0A397YX06_BRACM; Uncharacterized protein | ||||
STRING | Bra003377.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-160 | FAR1 family protein |
Publications ? help Back to Top | |||
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