PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098817001
Common NameGSBRNA2T00098817001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 364aa    MW: 41573.8 Da    PI: 4.5639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098817001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.48.9e-131993002113
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          p+G+rF P+d+ + ++yL++kv ++++++  +  e+ +i+++ P+dLp      e+ew+ ++++ +    g+ + r    + W   g+d+
  GSBRNA2T00098817001 199 PAGCRFLPSDDMMANYYLRNKVLEQPINACIIPGECpHIFSIPPRDLPGY--PIETEWHCYCRKPN----GQDP-R----SLWTRMGEDT 277
                          89**************************9777777799**********33..3478******9855....4444.3....47******** PP

                  NAM  91 evlskkgelvglkktLvfykgra 113
                           v+  +g+ vg+k+t ++ ++++
  GSBRNA2T00098817001 278 IVFGLEGNSVGIKRTYALTDQEK 300
                          ****9**********99984333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011911.8E-837105IPR005491ENT domain
PROSITE profilePS5113810.4337127IPR005491ENT domain
SuperFamilySSF1586392.35E-73897IPR005491ENT domain
PfamPF037354.7E-123897IPR005491ENT domain
SMARTSM011911.4129203IPR005491ENT domain
PfamPF037351.9E-7132192IPR005491ENT domain
SuperFamilySSF1019411.7E-16192341IPR003441NAC domain
PROSITE profilePS5100518.714198342IPR003441NAC domain
PfamPF023656.4E-7199323IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MADNKDLDSN PPAEDLTICP LKKIEIAHES ESEPELKKQK LKELQRKAYY SVLHTSKAEN  60
SATSHKKSHI IQRLMNEWKI DQETHVSVAK KVDNSERNAT SSLNFVPESL VVKRISARLP  120
NEECLPSNKN MKLEELHKQA YEDVLSAFNA ESPTLSSSRV LIVQDLLEEC NNIDHKAHIS  180
AKIYDKVETD PLLVEPFHPA GCRFLPSDDM MANYYLRNKV LEQPINACII PGECPHIFSI  240
PPRDLPGYPI ETEWHCYCRK PNGQDPRSLW TRMGEDTIVF GLEGNSVGIK RTYALTDQEK  300
GSDDIFLPGE IEPPREEWFI EEISLPPSVV DTDLVFCHVI LNKIEKKEEY EEEEEYDDDA  360
EEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098817001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104009.10.0PREDICTED: uncharacterized protein LOC103830058 isoform X1
TrEMBLM4CGB10.0M4CGB1_BRARP; Uncharacterized protein
STRINGBra003244.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.15e-36NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]