PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098805001
Common NameGSBRNA2T00098805001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 163aa    MW: 18399.8 Da    PI: 4.9584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098805001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.29.9e-17251521128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 
                          lppG+ Fh +de+l++ +L + v+g++ ++   i+++  d+y++ P  L  +  + +e++w+fF++++      +r+ r++    g W +
  GSBRNA2T00098805001  25 LPPGYGFHASDEQLLQLFLGPFVDGRDQKT-CPIHNItgDVYSSSPDVLTgAYEHDGEDKWFFFCTNKYDDDVTSRAGRVIVggGGEWVK 113
                          79*************************888.558887789*********9434444667*********999999*****65434789*** PP

                  NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g  k++++ + +l g k+t  fy  +      + W m+e +l
  GSBRNA2T00098805001 114 MGPIKKLFA-NITLLGFKRTQDFYV-QG--MDLSYWRMEELSL 152
                          *********.999***********3.22..3368999999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-2019156IPR003441NAC domain
PROSITE profilePS5100522.56725162IPR003441NAC domain
PfamPF023653.4E-1026151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEQAPLPANV VESITSFQLH RNLNLPPGYG FHASDEQLLQ LFLGPFVDGR DQKTCPIHNI  60
TGDVYSSSPD VLTGAYEHDG EDKWFFFCTN KYDDDVTSRA GRVIVGGGGE WVKMGPIKKL  120
FANITLLGFK RTQDFYVQGM DLSYWRMEEL SLRDKVCIDL YH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098805001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650916.11e-114NAC domain-containing protein 59-like
TrEMBLA0A397YLT81e-111A0A397YLT8_BRACM; Uncharacterized protein (Fragment)
TrEMBLA0A3P6BPH21e-111A0A3P6BPH2_BRACM; Uncharacterized protein
STRINGBra003237.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.13e-12NAC domain containing protein 64
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]