PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098598001
Common NameGSBRNA2T00098598001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 198aa    MW: 23053.8 Da    PI: 4.5489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098598001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM621.8e-1981391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lp+GfrF+Ptd e+ +++L++k+ +++++  +v +e+ di++  P+dLp   + +e++wyf++++   +     +    ++++Wk+ g++
  GSBRNA2T00098598001   8 LPVGFRFRPTDCEISKYFLTRKALEQRMRGPNVPEEChDIFSRRPRDLPG--YPRETHWYFYCRKLDGQV----TYN--SHSIWKQIGEE 89 
                          79****************************99999999***********4..34789******9876543....333..3579******* PP

                  NAM  90 kevlsk..kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                          + vl+   +++lvg+k+ ++f            ++ ++ + +W+m+ ++l
  GSBRNA2T00098598001  90 TGVLDPknNDTLVGIKRPFTFVdheepddilLSDKDESPQYNWFMDVFSL 139
                          ****98666677**********6665555443666677799999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-257156IPR003441NAC domain
PROSITE profilePS5100526.8528156IPR003441NAC domain
PfamPF023656.2E-139138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEPKHKALPV GFRFRPTDCE ISKYFLTRKA LEQRMRGPNV PEECHDIFSR RPRDLPGYPR  60
ETHWYFYCRK LDGQVTYNSH SIWKQIGEET GVLDPKNNDT LVGIKRPFTF VDHEEPDDIL  120
LSDKDESPQY NWFMDVFSLP LTISETDWVL CHVFRKNNEP ESEEEGENEE KETVDAESLD  180
LLIEKDGNIL PPSPSPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098598001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325430.0AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125174.11e-129PREDICTED: protein ATAF2-like
RefseqXP_013651867.11e-129protein ATAF2-like
TrEMBLA0A397YN351e-127A0A397YN35_BRACM; Uncharacterized protein
TrEMBLM4EI711e-127M4EI71_BRARP; Uncharacterized protein
STRINGBra028486.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-79NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]