PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098287001
Common NameGSBRNA2T00098287001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 359aa    MW: 41123.2 Da    PI: 5.0567
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098287001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.25.6e-35291532128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          +pGfrF Ptdeel+++yLk+kv+gk++ l + i evd+yk  +P+dLp  +++k++e+ew+fF+  +k y+++  + r+t++gyW++ g 
  GSBRNA2T00098287001  29 APGFRFCPTDEELISYYLKRKVQGKPIAL-DPIGEVDVYKQeDPSDLPgrSRIKTKEREWFFFTILEK-YEKSGYAMRSTNNGYWRQRGV 116
                          69*************************99.99*******9868*****6448999999*****99876.6777889999*********** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++++  +g++vg  k Lvfy     + ++t+Wv+hey+l
  GSBRNA2T00098287001 117 GKKIKRGgDGQVVGNVKRLVFY----TNNQSTNWVIHEYQL 153
                          *****9878899**********....344689*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.04128174IPR003441NAC domain
SuperFamilySSF1019412.48E-3928171IPR003441NAC domain
PfamPF023651.1E-2330153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVRDFMSTDR GLPAASEAVL RTATGRLTAP GFRFCPTDEE LISYYLKRKV QGKPIALDPI  60
GEVDVYKQED PSDLPGRSRI KTKEREWFFF TILEKYEKSG YAMRSTNNGY WRQRGVGKKI  120
KRGGDGQVVG NVKRLVFYTN NQSTNWVIHE YQLVDNDGHG LKTNAYVLCR LSDSSRSINA  180
PFSEQEWDDA DNEKIQQESN SRSMDLFDLN ELPREFEIDD DDSKAVDQDD NYDACLLPCV  240
LNKEAPLPFI RYRRKRQLDS DNSIQTTPKT TSGSIPYVAA LLERSEPAPV DTTMVVPTEE  300
LIKDLQKERQ QIAVERKRYK LEMTNAEMTI TDLEGKNDAL RMEIEELKKK NSNKEQCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-243017317167Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098287001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893930.0AC189393.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678776.10.0NAC domain-containing protein 53-like
TrEMBLA0A078IJ870.0A0A078IJ87_BRANA; BnaCnng20180D protein
STRINGBo2g010310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-68NAC domain containing protein 50
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]