PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098215001
Common NameGSBRNA2T00098215001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 330aa    MW: 37291.9 Da    PI: 7.2723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098215001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39.1e-169732795
                         ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3 27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                         +++ + +kt +l+ + g  W+v++  ++k++++ ++kGW++Fv +n L +gDf++F ++g + fe   +
  GSBRNA2T00098215001  9 ELPRTLPKTAILQGTGGCFWKVEM--KRKRDEVHFGKGWNKFVTDNSLTDGDFLTFVYNGANVFEV--S 73
                         55677999****************..********************************99888844..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.1E-5178IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-18180IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.833178IPR003340B3 DNA binding domain
CDDcd100171.11E-12175No hitNo description
Gene3DG3DSA:2.40.330.101.4E-16277IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-12871IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-6231323IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.21233322IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-8236328IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MIPISYNDEL PRTLPKTAIL QGTGGCFWKV EMKRKRDEVH FGKGWNKFVT DNSLTDGDFL  60
TFVYNGANVF EVSIYGLGGC KEMRAVIEVE EVKEDSVVSL SSTDSDTSSK SEVANTISKN  120
KGQSQVVEVE DESEEAEAET CSESTVAKTT TGSRNKGKKK EKVVGSSNED SDSDYTEAND  180
DSESDDTEAS DQLNAFSESS NNVAQPKKKR ERVTIKKIKD PEKYLVDPKN VFFETNVKNR  240
PYELLVSAQL VKDYDLKFKK LVYYTDYHKD GKLQAKTTKW KDNRVCIKKW NRICKRNKLK  300
KGDGILCELK RKEGFVYAVR IHIVCEKDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098215001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561368.10.0B3 domain-containing protein At4g34400-like
SwissprotQ9SZ051e-92Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A078JS090.0A0A078JS09_BRANA; BnaCnng67970D protein
STRINGBo7g116840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-44B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]