PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097578001
Common NameGSBRNA2T00097578001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 313aa    MW: 35379.3 Da    PI: 8.4162
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097578001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-14831591195
                          HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++++ l++p  f+++h +gk +++ t tl++    ++W+v    + ++    lt+GWkeF++a++L+ gD+v+Fkl+g++ f  +v+
  GSBRNA2T00097578001  83 FQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159
                          5566.9**********7555.56668888874777*****99..7777....************************998888..665 PP
2B356.64.8e-18199293298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk++++ ++ +++ l lp   +  + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+   gD++vF ++g+ ++ 
  GSBRNA2T00097578001 199 FKAEVTDSNVREDKLNLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFNVVGDGNTL 286
                          78999999999999*******9888999877.6*****************99999999998.***********************98777 PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          +++ v++
  GSBRNA2T00097578001 287 PLMCVCS 293
                          9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2067166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-2069170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19672164IPR003340B3 DNA binding domain
CDDcd100174.87E-1573161No hitNo description
SMARTSM010193.0E-1875164IPR003340B3 DNA binding domain
PfamPF023622.0E-985156IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-15197288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-16198286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.435198295IPR003340B3 DNA binding domain
CDDcd100171.19E-13198286No hitNo description
PfamPF023625.0E-16199293IPR003340B3 DNA binding domain
SMARTSM010192.5E-15199295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVPIHFLKSP NQTRFPPIFG KPFPLLTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP  60
IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV  120
IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH  180
DHQNNRTEAR FSYSWDYCFK AEVTDSNVRE DKLNLPVGAT GCNALNKECK KAKLVNIEGK  240
AWNVSMRFNE SGGFYYIKGW RKFCAENKCH IGDSFVFNVV GDGNTLPLMC VCSPSKECLK  300
SAGDIASSSR VN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097578001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895991e-167AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102011.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009102349.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009110111.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009110645.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009131313.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X2
TrEMBLA0A078ILG90.0A0A078ILG9_BRANA; BnaA10g28180D protein
STRINGBra036483.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16565313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-65B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]