PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00097284001 | ||||||||
Common Name | GSBRNA2T00076094001, GSBRNA2T00097284001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 62aa MW: 6363.3 Da PI: 4.6362 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 66.4 | 5.8e-21 | 1 | 57 | 319 | 374 |
GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++GF pvpl+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ GSBRNA2T00097284001 1 MGSVGFDPVPLGSSAFKQASMLLSVFAgGDGYRVEENDGCLMLGWQTRPLIATSAWK 57 7899****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.9E-18 | 1 | 57 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:1903506 | Biological Process | regulation of nucleic acid-templated transcription |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MGSVGFDPVP LGSSAFKQAS MLLSVFAGGD GYRVEENDGC LMLGWQTRPL IATSAWKLAG 60 A* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00097284001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130367.1 | 3e-35 | PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGL2 | ||||
Refseq | XP_013637838.1 | 3e-35 | PREDICTED: DELLA protein RGL2 | ||||
Refseq | XP_013747675.1 | 3e-35 | DELLA protein RGL2 isoform X3 | ||||
Refseq | XP_022569045.1 | 3e-35 | DELLA protein RGL2 isoform X1 | ||||
Refseq | XP_022569046.1 | 3e-35 | DELLA protein RGL2 isoform X2 | ||||
Swissprot | Q7Y1B6 | 8e-30 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A078I207 | 1e-36 | A0A078I207_BRANA; BnaA05g32630D protein | ||||
TrEMBL | A0A0D3CN13 | 8e-34 | A0A0D3CN13_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397ZJP9 | 7e-34 | A0A397ZJP9_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5ZGI2 | 7e-34 | A0A3P5ZGI2_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6FP66 | 7e-34 | A0A3P6FP66_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g149920.1 | 1e-34 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26445 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-32 | RGA-like 2 |
Publications ? help Back to Top | |||
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