PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096944001

Common Name

GSBRNA2T00096944001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 290aa MW: 31884.3 Da PI: 4.7327

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096944001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.4	1.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++ +v+r ++fdfl ++v + GSBRNA2T00096944001 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.55E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	2.6E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60 TVSSLHLKHC VERYNVFDFL REVVSKVPDY GQAQGQGHGD VAMDDRTISK RRKPISDEVN 120 DSDEENKKSK TQEVGNAKPS GRGSRGRGRG RGRGGRAAKA AERENLNREM ELETAMAEQP 180 PPQDSSQMHV SVSSPQENEK KDADGGIAAS NEDAKQQLQS PKEGIDFDLN AESLDLNETK 240 PAPVAAADTA TTSDEYPGWP MELGKIDPTQ LASLGKRIDE EEEDYDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	153	RGRGRGRGRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12774	1e-174	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096944001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353067	0.0	AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013611468.1	1e-179	PREDICTED: dr1-associated corepressor
TrEMBL	A0A078IKW1	0.0	A0A078IKW1_BRANA; BnaA01g30580D protein
STRING	Bo1g139230.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-137	nuclear factor Y, subunit C11

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]