PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00096208001

Common Name

GSBRNA2T00096208001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 254aa MW: 28533.2 Da PI: 4.5465

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00096208001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.1e-37	35	92	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s GSBRNA2T00096208001 35 TAPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 92 5668**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	34	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	37	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MMLPYNAHNS YQHQFPSPEL EIPEKWKVPY GHDETAPPCP RCASSNTKFC YYNNYSLSQP 60 RYFCKGCRRY WTKGGSLRNI PVGGGCRKRS RSRNNSHKRF GRNENLQRDG LINQDEGSQS 120 SHAGSDIDLA AVFAQYVTNG SPSSTDNTTG SDQDSPLTTT TNHALDSLTW DICQETDVNL 180 GFYGTEKIQD GFGQFLQEDE EEMFEFQGLL DDKEIQEILD CAFSEEPDQL ISQGSFMING 240 DHWSSTDLAT FGI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KRSRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00096208001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493472	1e-146	AB493472.1 Arabidopsis thaliana At1g21340 gene for hypothetical protein, partial cds, clone: RAAt1g21340.
GenBank	AC015447	1e-146	AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBank	CP002684	1e-146	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	DQ446268	1e-146	DQ446268.1 Arabidopsis thaliana clone pENTR221-At1g21340 Dof-type zinc finger domain-containing protein (At1g21340) mRNA, complete cds.
GenBank	DQ652847	1e-146	DQ652847.1 Arabidopsis thaliana clone 0000013461_0000009694 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149653.1	0.0	PREDICTED: dof zinc finger protein DOF1.2
Swissprot	P68349	1e-151	DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBL	A0A078IJR1	0.0	A0A078IJR1_BRANA; BnaA06g15080D protein
TrEMBL	A0A3P5YF99	0.0	A0A3P5YF99_BRACM; Uncharacterized protein
STRING	Bra017906.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-143	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]