PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095592001
Common NameGSBRNA2T00095592001, LOC106417994
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 265aa    MW: 29677.7 Da    PI: 6.7419
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095592001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.88e-313587254
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                         prl+Wt +LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ++R
  GSBRNA2T00095592001 35 PRLKWTADLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMHR 87
                         8***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9063191IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-273188IPR009057Homeodomain-like
SuperFamilySSF466892.15E-133587IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-223587IPR006447Myb domain, plants
PfamPF002498.3E-83687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGKRGGKNGN ENYDGVGFNG QGGSGVRPYV RSPVPRLKWT ADLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQMHRGSK LTLGKPEENS LFSIRRQDTE EDYLQDYLSL  120
HIRNDCPTGF HTFSLSSHSS RGRRKEHTSE SRGGDDVDDS LHIMNLKTNE TTFPSHHFHQ  180
NTEKETNPWH EHEHEHEQEH EHEEEELSLS LSLNHHHLRS NGSSVSETSD AVSTCSAPFV  240
NKDCFGSSPK IDLDLNLSIS LLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-163690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-163690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-163690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-163690357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095592001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714142.10.0putative Myb family transcription factor At1g14600
SwissprotQ700D94e-59MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078FYM80.0A0A078FYM8_BRANA; BnaC09g20940D protein
STRINGBo9g071530.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-79G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]