PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095503001
Common NameGSBRNA2T00042092001, GSBRNA2T00095503001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 324aa    MW: 37125.4 Da    PI: 5.1732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.51.1e-091813111128
                  NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                          de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ +g+l
  GSBRNA2T00095503001  18 DELMLLRYLKPMIDDGASWPQHFTEDADVFNKNPSKEF-----NPENTVFVIVNPRTEACGKTDG--CEYGSWRIMARDKLIKNEvTGKL 100
                          5556789*****999996665779999*******8753.....3355666667777777665544..4689************9989999 PP

                  NAM 100 vglkktLvfykgrapkge..ktdWvmheyrl 128
                           g kk+L f  +++++g+  k +Wvm+eyrl
  GSBRNA2T00095503001 101 LGFKKILKFCVEKTKRGReyKRSWVMEEYRL 131
                          **********665555554499*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.478146IPR003441NAC domain
SuperFamilySSF1019411.7E-1918144IPR003441NAC domain
PfamPF023652.2E-619131IPR003441NAC domain
SuperFamilySSF1019411.29E-21158321IPR003441NAC domain
PROSITE profilePS5100516.05171323IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAAGDYFRIR DDLMGAGDEL MLLRYLKPMI DDGASWPQHF TEDADVFNKN PSKEFNPENT  60
VFVIVNPRTE ACGKTDGCEY GSWRIMARDK LIKNEVTGKL LGFKKILKFC VEKTKRGREY  120
KRSWVMEEYR LLNPKQDHVI CKIRLLFHAE IGFLLSKHFS YSSGPLPATQ SLPAYGYGLP  180
DPEYEGAYYL RSLIDHENEW PSYVTNDVFC MHPSALVDPH RDQMFAESGI CIFANRTEAC  240
GYTDGCDGGC WRTMEGDKPI ASIMEGETFG YKRVFKFCEA DGTAKYSYSD PYGEVVFLTW  300
IMEEYRLAEE EMKDKVLCVI KLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.111160.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095503001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694840.10.0uncharacterized protein LOC106398885
TrEMBLA0A078FS830.0A0A078FS83_BRANA; BnaA06g25650D protein
STRINGBra002857.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-114NAC domain containing protein 23
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]