PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095486001
Common NameGSBRNA2T00095486001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 325aa    MW: 36972.4 Da    PI: 5.4737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095486001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.93.9e-101913211128
                  NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                          de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ +g+l
  GSBRNA2T00095486001  19 DELILLRYLKPMIDDGASWPQHFGEDADVFNKNPSTVF-----NPENTVFLIVNPRTEACGKTDGC--EYGSWRIMARDKLIKNEvTGKL 101
                          5556789******99996665678999*********95.....44567788888888777755544..689************9989999 PP

                  NAM 100 vglkktLvfykgrapkge..ktdWvmheyrl 128
                           g kk+L f  +++++g+  k +Wvm+eyrl
  GSBRNA2T00095486001 102 LGFKKILKFCVKKTKRGReyKRSWVMEEYRL 132
                          **********666666654499*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.1829147IPR003441NAC domain
SuperFamilySSF1019418.24E-2019145IPR003441NAC domain
PfamPF023651.0E-619132IPR003441NAC domain
PROSITE profilePS5100515.761173324IPR003441NAC domain
SuperFamilySSF1019418.11E-21176322IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAAGDYLGI RDDLMGAGDE LILLRYLKPM IDDGASWPQH FGEDADVFNK NPSTVFNPEN  60
TVFLIVNPRT EACGKTDGCE YGSWRIMARD KLIKNEVTGK LLGFKKILKF CVKKTKRGRE  120
YKRSWVMEEY RLLNPKQDHV ICKIRLLFHA EIGFLLSKHF SYSSGPLPAT QSLPAYGYGF  180
PNPEYEGAYY LRSLIDHENE WPSYVANDVF CMHPSALVDP HRDQMFAESG ICIFANRTEA  240
CGYTDGCDGG CWRIMEGDKP IASIMEGETF GYKRVFKFCE ADGTAKYSYS DPYGEVVFLT  300
WIMEEYRLAE EEMKDKVLCV IKLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.111160.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095486001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120111.10.0PREDICTED: uncharacterized protein LOC103845036
TrEMBLA0A078FWN40.0A0A078FWN4_BRANA; BnaA10g10100D protein
STRINGBra002857.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.11e-113NAC domain containing protein 23
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]