PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00095484001
Common NameGSBRNA2T00095484001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 155aa    MW: 17937.8 Da    PI: 9.6437
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00095484001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.64.8e-101812911128
                  NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                          de ++++yLk+ +++     +++ ++ d+++ +P+ +         ++ f + + ++++ gk      + g W++   dk ++++ +g+l
  GSBRNA2T00095484001  18 DELILSRYLKPMIDEGASWPQHFDEDSDVFNKNPSAIS--------NTLFVIVKPRTETCGKTDG--CEYGSWRTMAGDKLIKNEeTGKL 97 
                          5556789999999999855534456679******9996........3456666666666554443..468************99878889 PP

                  NAM 100 vglkktLvfy.kgrapkge..ktdWvmheyrl 128
                           g kk+L f  k+++ +g+  k +Wvm+eyrl
  GSBRNA2T00095484001  98 LGFKKILKFClKKTKTRGReyKRSWVMEEYRL 129
                          *********97344444444499*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.8768147IPR003441NAC domain
PfamPF023658.3E-818129IPR003441NAC domain
SuperFamilySSF1019414.84E-2018145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MASAEYLRIR NELMGAGDEL ILSRYLKPMI DEGASWPQHF DEDSDVFNKN PSAISNTLFV  60
IVKPRTETCG KTDGCEYGSW RTMAGDKLIK NEETGKLLGF KKILKFCLKK TKTRGREYKR  120
SWVMEEYRLA SKWNPKQDHV ICKIRLLWVH TCRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.111161e-132flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00095484001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665177.11e-104uncharacterized protein LOC106369586
TrEMBLA0A078FW371e-112A0A078FW37_BRANA; BnaA10g10080D protein
STRINGBo9g123430.14e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60340.11e-49NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]