PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60340.1 | ||||||||
Common Name | T13D8.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 42932.9 Da PI: 6.2966 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 42.3 | 2.3e-13 | 19 | 131 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106 +de ++++yLk+ v + + +++i+++++++ +P++ ++e+ f + + +++a gk +sg W++ g+dk ++s+ +g+ g kk+L AT1G60340.1 19 EDEVIISRYLKPMVVNGDSWPDHFIEDANVFTKNPNEVF----NSERP-RFVIVKPRTEACGKTDG--CESGCWRTMGRDKLIKSEeTGKILGFKKIL 109 588899*******99888666688**************5....23344.45555556666654444..479*************98778889****** PP NAM 107 vfykgrapkgektdWvmheyrl 128 f + +p k +Wvm+eyrl AT1G60340.1 110 KFCIKWKPIEYKRSWVMEEYRL 131 ***9999999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.296 | 10 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-9 | 19 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-26 | 19 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-22 | 160 | 282 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.918 | 174 | 325 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEDNDAAYDQ VKSELLNSED EVIISRYLKP MVVNGDSWPD HFIEDANVFT KNPNEVFNSE 60 RPRFVIVKPR TEACGKTDGC ESGCWRTMGR DKLIKSEETG KILGFKKILK FCIKWKPIEY 120 KRSWVMEEYR LTNNLNWKQD HVICKIRLLF EAEISFLLAK HFYTTSESLL RHELLPSYGY 180 LSNTQEEDEF YLKTIMTSEG NDWPSYVTNN VYCLHPLELV DLQDVMFQSY GTCIFANGTC 240 GESDKCDGGY WKILHGDKLI KSNFGMVTGF KKVFEFYETV IHRYFCDGEE VKEETERLGH 300 QRCQGLLLPH RRGHVQTKSC GVVTVKEKRS LVEQPEEIVA APETPRQGKS EHNDPLKRKK 360 AIGCVGEKAE M |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18406707 | 0.0 | ||||
Genevisible | 264273_s_at | 1e-128 | ||||
Expression Atlas | AT1G60340 | - | ||||
AtGenExpress | AT1G60340 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176237.1 | 0.0 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | O80755 | 0.0 | O80755_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
STRING | AT1G60340.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60340.1 |
Entrez Gene | 842329 |
iHOP | AT1G60340 |
wikigenes | AT1G60340 |
Publications ? help Back to Top | |||
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