PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00095434001 | ||||||||
Common Name | GSBRNA2T00095434001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 500aa MW: 55540.9 Da PI: 5.9496 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 318.3 | 1.6e-97 | 114 | 482 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfse 86 lv+lL+++A+a d++ l++ lLa+l+++ s ++ ++m+Rlaa+ft++L++ + ++ ++ p ++ + ++ ++++ a++++++ GSBRNA2T00095434001 114 LVHLLVAAADASIGADKTreLTRVLLAKLKDMTSTNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgPHQHPDVHDRVDVMLAFQMLQN 201 689******997554433349***********6666659*************987777..666666625555555669999********* PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeel 172 +sP+++f++lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp +lRiT+++++++g s +++e g+rL+ fAe++ GSBRNA2T00095434001 202 MSPYINFGYLTATQAILEAVQYERRIHIVDYDITDGVQWPSLMQALVSRSTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESI 291 **************************************************765446*********999999999**************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleal 261 g pf+++ + +++++++L++ +gEa+++n+vl+l r+ +++ ++ ++L+ k+l+Pk+v++v++e+ + +++ Fl rf++ l GSBRNA2T00095434001 292 GQPFSYHH-CRMDSDTFNPSSLKLVRGEAVVINCVLHLPRFSHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLvGNQGFLYRFMDLL 377 *******9.7889*****************************98888887...9**********************9************* PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 + +sa+fdslea+ +r +vEr+++g++++ +++ ++ e++++W +l + GFkpv++s + +qaklll+ ++ dgy v GSBRNA2T00095434001 378 HQFSAIFDSLEAG-----PARGFVERVIFGPWVSGWLTRIAIT--AEVESFASWPLWLATNGFKPVEVSFANRCQAKLLLSLFN-DGYGV 459 *************.....9*******************99997..99*************************************.***** PP GRAS 352 eee.sgslvlgWkdrpLvsvSaW 373 ee ++ lvlgWk+r+Lvs+S+W GSBRNA2T00095434001 460 EELgQNGLVLGWKSRRLVSASFW 482 *98789999************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.37 | 88 | 463 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-95 | 114 | 482 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MHFPFFFITS MTMNPPYDDF PNLLFSNNTA TATSTSSCVE QHDGIISLDM DWDCDFHDLI 60 ESMMSDKGAT TESPPMLPCY HGQEGILNSS STGLSMADEL DHDVEADESK GLRLVHLLVA 120 AADASIGADK TRELTRVLLA KLKDMTSTND RTNMERLAAH FTNGLSKLHK EANVQRQYGP 180 HQHPDVHDRV DVMLAFQMLQ NMSPYINFGY LTATQAILEA VQYERRIHIV DYDITDGVQW 240 PSLMQALVSR STGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC 300 RMDSDTFNPS SLKLVRGEAV VINCVLHLPR FSHQPPNSII SFLSEAKTLN PKLVTLVHEE 360 VGLVGNQGFL YRFMDLLHQF SAIFDSLEAG PARGFVERVI FGPWVSGWLT RIAITAEVES 420 FASWPLWLAT NGFKPVEVSF ANRCQAKLLL SLFNDGYGVE ELGQNGLVLG WKSRRLVSAS 480 FWASCESSEQ DSLHNTIHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-40 | 125 | 482 | 29 | 378 | Protein SCARECROW |
5b3h_A | 5e-40 | 125 | 482 | 28 | 377 | Protein SCARECROW |
5b3h_D | 5e-40 | 125 | 482 | 28 | 377 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00095434001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX242555 | 0.0 | JX242555.1 Brassica ruvo isolate BruNSP2_2 nodulation signaling pathway 2-like protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013666923.1 | 0.0 | scarecrow-like protein 26 | ||||
Swissprot | Q9SUF5 | 0.0 | SCL26_ARATH; Scarecrow-like protein 26 | ||||
TrEMBL | A0A078FWK3 | 0.0 | A0A078FWK3_BRANA; BnaA10g09700D protein | ||||
STRING | Bra002894.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9914 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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