PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00094723001

Common Name

GSBRNA2T00094723001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 222aa MW: 25782.1 Da PI: 8.9293

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00094723001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.1e-13	82	137	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + +r+rr +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + GSBRNA2T00094723001 82 DERRARRVVSNRESARRSRMRKKKQIEELQQQVEQLMVLNHNLSEKVINLLESNHQ 137 6689****************************************999888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-14	80	144	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.3E-11	81	138	No hit	No description
PROSITE profile	PS50217	11.116	82	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-10	84	136	No hit	No description
Pfam	PF00170	6.4E-12	84	142	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.03E-15	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MIRHLKPNME SSPHRSHHCF DILEGMPPQD DHFNSSFLQN PNFHVHLQSI SPNLSTRSNN 60 NRSDHLDPNG EPFCHREGLD PDERRARRVV SNRESARRSR MRKKKQIEEL QQQVEQLMVL 120 NHNLSEKVIN LLESNHQIIQ ENSHLKEKVN SFHLLMAEML IPMRNVDGSI NDRDANHLRG 180 ETSNRTNTFF GSAFIFLIKA LYRDSRVCIE TRATHLKVLA N*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10918	0.0	microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00094723001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111959.1	1e-138	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013659178.2	1e-138	basic leucine zipper 43-like
TrEMBL	A0A078FVP2	1e-160	A0A078FVP2_BRANA; BnaA09g05450D protein
STRING	Bo9g014350.1	1e-132	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	4e-73	basic leucine-zipper 70

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]