PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00094003001
Common NameGSBRNA2T00094003001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 351aa    MW: 38794.8 Da    PI: 4.6661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00094003001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.7e-1123911390
                         TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         +++  +p  f++++++   +   l+l++    r+W+vkl  ++++    +t+GW++F +a+ L++ D+++F+ +g++ f
  GSBRNA2T00094003001 23 NSNPLIPEAFFAANNKL--T--SLKLTSdACDRTWQVKL--NGRR----FTEGWEDFSNAHCLRDDDVLLFRDVGQMIF 91
                         34468999999888633..3..4666664788*******..8887....9**********************4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-12895IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-121097IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.9531199IPR003340B3 DNA binding domain
SMARTSM010196.7E-121499IPR003340B3 DNA binding domain
CDDcd100175.01E-101494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MADPPSSPKS NAPFFVVSLA SHNSNPLIPE AFFAANNKLT SLKLTSDACD RTWQVKLNGR  60
RFTEGWEDFS NAHCLRDDDV LLFRDVGQMI FHVTPSGRSF SQIHYISSSS DNIEADEIDD  120
DTDDGSEDED GDSEDDEGGS KFEDGSHSVS SQASETAVAD EGTTRGKKPV EGKELSEFQT  180
MWNFKKQDLA MKEKLSKMKI LNQNNLLLCR DEIETEDCPE TAQMTQNRTV AIDFKPDMLR  240
SGQLVSSNTF CFKENGINEA GEKVGDSFTL DVVRGGTSPV LKICSKEKEA SVDGNQTTSR  300
RQSRMIQASR AEEEMETRVQ KKARVSGEGG SSRRKQIKCW SSKLAAHEST *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.113950.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00094003001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078JWW00.0A0A078JWW0_BRANA; BnaA01g34750D protein
STRINGBra011287.1-P2e-60(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.17e-30B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]