PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092475001
Common NameGSBRNA2T00092475001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 267aa    MW: 30668.2 Da    PI: 5.2778
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092475001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.52.6e-29101188291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                          fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p
  GSBRNA2T00092475001 101 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 188
                          9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-27101188IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNVDFRIDNG DADGMMMTIS VENHNEMGES SGQAMIEQDD DENRNEIGEN SNQEMPLEQD  60
EKVDPDSIPL TVSDMAEEEV QGGDEPYVGQ EFESEAAAHG FYNAYATKVG FVIRVSKLSR  120
SRHDGSPIGR QLVCNKEGYR LPSKRDKVIR QRAETRVGCR AMILIRKENS GKWVITKFAK  180
EHNHPLMPGR VRRGCIYDQY PNEHDKIQEL MQQLAAEKKR AATYKRHLEM LFEQIEQHNE  240
SLTKRIQHIV DNVRDLDQRD HQQNQV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.254170.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092475001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602011.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
RefseqXP_022563243.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLA0A078JQE80.0A0A078JQE8_BRANA; BnaC08g48980D protein
STRINGBo8g093280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-163FAR1 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]