PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00092372001 | ||||||||
Common Name | GSBRNA2T00092372001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35848.8 Da PI: 6.6476 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+ +v+++G g W+t + + g++R++k+c++rw +yl GSBRNA2T00092372001 14 KGAWTHEEDHKLIAYVQLHGEGGWRTLPDKAGLRRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ gRt++++k++w+++ GSBRNA2T00092372001 67 RGEFSQEEEDSIIRLHAIHGNK-WSAIARRLP-GRTDNEVKNHWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.069 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.22E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.714 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MVRTPCCRAE GLKKGAWTHE EDHKLIAYVQ LHGEGGWRTL PDKAGLRRCG KSCRLRWANY 60 LRPDIKRGEF SQEEEDSIIR LHAIHGNKWS AIARRLPGRT DNEVKNHWNT HIKKRLIKKG 120 IDPLTHKSLN GKSSDHPETP PDKSSVHQDD DDQKSNKNNA LGSLSARFLN RVANRFGKRI 180 NQSVLSDIIG SGDPFTSFTT PTTSASECEK SSSSFSTPNS SNLLINENMV LDATSLSSST 240 FSSDTSDPSV YDHIFDDLED MTAFSSRFLN DVVSHDDEDF LMLDESCLEK TSFMRELTRI 300 LQEDKIETTT FSDSRVTP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00092372001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ670120 | 0.0 | KJ670120.1 Brassica napus MYB transcription factor 122 (MYB122.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013676724.1 | 0.0 | transcription factor MYB122-like | ||||
Swissprot | Q9C9C8 | 1e-156 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A078IGM9 | 0.0 | A0A078IGM9_BRANA; BnaA02g16690D protein | ||||
STRING | Bra008131.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-138 | myb domain protein 122 |