PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092275001
Common NameGSBRNA2T00092275001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30258.6 Da    PI: 5.5908
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092275001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.9e-2169122356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t+eq++ Le+ Fek++++  e++++LA+klgL+ rqV+vWFqNrRa++k
  GSBRNA2T00092275001  69 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLANKLGLQPRQVSVWFQNRRARWK 122
                          56689************************************************9 PP
2HD-ZIP_I/II128.52.7e-4169160293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl++eqv+lLE+sFe+e+kLeperK++la++Lglqprqv vWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+++
  GSBRNA2T00092275001  69 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLANKLGLQPRQVSVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSQV 158
                          9**************************************************************************************999 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  GSBRNA2T00092275001 159 TS 160
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2153126IPR009057Homeodomain-like
PROSITE profilePS5007117.92964124IPR001356Homeobox domain
SMARTSM003899.7E-2067128IPR001356Homeobox domain
CDDcd000861.10E-1869125No hitNo description
PfamPF000463.5E-1869122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-2271130IPR009057Homeodomain-like
PRINTSPR000315.4E-695104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6104120IPR000047Helix-turn-helix motif
PfamPF021831.2E-15124166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MESNKFFFNP STSHGNMFFL GNLNPVVQAG SMMNMEESSS KRRPFFCSPD DLLYDDVDVD  60
YYDDHTPDKK RRLTHEQVHL LEKSFEKENK LEPERKTQLA NKLGLQPRQV SVWFQNRRAR  120
WKTKQLERDF NLLKSSYDQL LSNYDSILKD NHLLRSQVTS LAGKVQAKAE TAPYQVPESN  180
QLDPVNMNRF EPAIKTEDRL SSGSAVLDED APHQLRDSCD SYFPTIVPIH HSAEEHNNGS  240
GNDTGCFADV FVQGESFGFW GWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83510.0leaf| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00092275001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585413.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-118HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A078IGE10.0A0A078IGE1_BRANA; BnaC05g48840D protein
TrEMBLA0A3P6FIV50.0A0A3P6FIV5_BRAOL; Uncharacterized protein
STRINGBo5g155120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-121homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]