PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00092022001 | ||||||||
Common Name | GSBRNA2T00092022001, LOC106411656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33056.2 Da PI: 7.7814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+++k+ g+W+t ++ g+ R++k+c++rw +yl GSBRNA2T00092022001 14 KGPWTAEEDEILVEYIKKNSHGSWRTLPKNAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l GSBRNA2T00092022001 67 RGPFTPEEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.144 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.55E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.102 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.02E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGRTPCCDKK GLKKGPWTAE EDEILVEYIK KNSHGSWRTL PKNAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEEKLVVQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLLSMG 120 LDPKTHEPLP SFGLAIQAPA SPTTRHMAQW ESARLEAEAR LSRESMLFNP SSLGGGGKTD 180 CDHFLRIWNS EIGDSFRNLA PFDETTTTTT SQSPCSRTTT TTTTSSSSAA LPKSSTNSCV 240 GKEIVVKTHH HGSDSYSPCS NNLEDVSSDS ALQLLLDFPI SDDDMSFLEE NISSYSKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00092022001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013707913.1 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9M2D9 | 1e-174 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A078IHQ2 | 0.0 | A0A078IHQ2_BRANA; BnaA09g39030D protein | ||||
STRING | Bo8g095790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6982 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-160 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Entrez Gene | 106411656 |
Publications ? help Back to Top | |||
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