PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00091100001 | ||||||||
Common Name | GSBRNA2T00091100001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25107.8 Da PI: 7.9475 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.3 | 3.3e-14 | 38 | 125 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ ++ k++++ +p +f+ + g ++ + t+t++++ g + ++++ ++++++++++kGW+eF++a+ + +g f+ F ++g+s+f +v GSBRNA2T00091100001 38 MILLSTIKEKMMKIPARFV-RLG--PKLTDTVTIQTPVGFKRSIRI--KRTGDQVWFEKGWNEFAEAHSISQGHFLYFCYEGNSSF--RV 120 55678889999********.565..44777****************..*************************************9..99 PP EEE-S CS B3 95 kvfrk 99 ++f+ GSBRNA2T00091100001 121 MIFDV 125 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.41E-19 | 29 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-17 | 31 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.07E-13 | 33 | 124 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 34 | 126 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-13 | 35 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-12 | 38 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKSNMNTSRR SSARITSAAT QRQQKPEPEP GVKKFIKMIL LSTIKEKMMK IPARFVRLGP 60 KLTDTVTIQT PVGFKRSIRI KRTGDQVWFE KGWNEFAEAH SISQGHFLYF CYEGNSSFRV 120 MIFDVSASEI DYPMDKVHCI ESDDEVMEVM DTDDEEGFTR VDSSDNDSSD EEAIDLEKLL 180 KKKLRVNVKS ETINIGNVSR LKLKSCGFFF FFFFFSCV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16115 | 1e-180 | microspore-derived embryo| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00091100001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602987.1 | 1e-118 | PREDICTED: B3 domain-containing protein At1g49475 isoform X1 | ||||
Refseq | XP_013720044.1 | 1e-118 | B3 domain-containing protein At1g49475-like isoform X1 | ||||
Swissprot | Q9XIB4 | 1e-86 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A078FU24 | 1e-160 | A0A078FU24_BRANA; BnaA08g02660D protein | ||||
STRING | Bra014191.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-67 | B3 family protein |
Publications ? help Back to Top | |||
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