PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00090501001

Common Name

GSBRNA2T00090501001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 404aa MW: 46302.9 Da PI: 7.499

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00090501001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.1	8.4e-27	75	156	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ +s +++y++++e GSBRNA2T00090501001 75 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHRDRGN---RSAKMSYYKEIE 156 ******************************************************************95...566899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-4	65	136	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	67	131	IPR017877	Myb-like domain
SMART	SM00717	0.0096	71	133	IPR001005	SANT/Myb domain
CDD	cd12203	6.98E-30	73	138	No hit	No description
Pfam	PF13837	3.7E-20	74	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MFVSDKPRPI DFYKDDNTTT ARDNMIIDVP TNAPGRDLHP HHNHHHHLQP QQILLGESSG 60 EDHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISAK MREKGFDRSP 120 TMCTDKWRNL LKEFKKAKHR DRGNRSAKMS YYKEIEEILR ERSKKVTATG QYSKSPNATP 180 TAKVDSFMQF TDKGFDDPSI SFGSVEANGR PALNLERRLD HDGHPLAIAT VDVVAANGVP 240 PWNWRETPGN GNFFIYVIQT GGDSHGQPFG GRVITVKFGD YTRRIGVDGS TEAIKDTIRS 300 AFGLRTRRAF WLEDEDQVVR CLDRDMPLGN YLLHVDDGLA IRVCHYDESN QLPVHTEEKV 360 FYTEEDYRDF LARRGWTCLQ FDGFRNIDNM DDLQPGAVYR GVR*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MFVSDKPRPI DFYKDDNTTT ARDNMIIDVP TNAPGRDLHP HHNHHHHLQP QQILLGESSG  60
EDHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISAK MREKGFDRSP  120
TMCTDKWRNL LKEFKKAKHR DRGNRSAKMS YYKEIEEILR ERSKKVTATG QYSKSPNATP  180
TAKVDSFMQF TDKGFDDPSI SFGSVEANGR PALNLERRLD HDGHPLAIAT VDVVAANGVP  240
PWNWRETPGN GNFFIYVIQT GGDSHGQPFG GRVITVKFGD YTRRIGVDGS TEAIKDTIRS  300
AFGLRTRRAF WLEDEDQVVR CLDRDMPLGN YLLHVDDGLA IRVCHYDESN QLPVHTEEKV  360
FYTEEDYRDF LARRGWTCLQ FDGFRNIDNM DDLQPGAVYR GVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-53	69	154	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00666	PBM	Transfer from GSVIVG01007522001	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00090501001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711568.1	0.0	trihelix transcription factor GT-1-like
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A078FSM7	0.0	A0A078FSM7_BRANA; BnaC08g40320D protein
STRING	Bra026903.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]