PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00090396001
Common NameGSBRNA2T00090396001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 552aa    MW: 61099.1 Da    PI: 7.3781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00090396001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-1275127155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++++  e+Er+RR+++ s f +Lr +lP+      ++K s ++ +++Av+YIk+L+
  GSBRNA2T00090396001  75 KKAKRREIERQRRQEVTSLFKNLRYILPSqY---IKGKRSSSDHVQEAVNYIKDLE 127
                          567889***********************66...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1372147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.26274126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-1075146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1075127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.005280132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd121566.22E-152237540No hitNo description
SuperFamilySSF522833.61E-29239370No hitNo description
PfamPF003893.4E-23244548IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Gene3DG3DSA:3.40.50.7201.9E-28254349IPR016040NAD(P)-binding domain
SuperFamilySSF517351.46E-47336517IPR016040NAD(P)-binding domain
PfamPF028261.6E-46344517IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene3DG3DSA:3.40.50.7202.4E-48350517IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046983Molecular Functionprotein dimerization activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDFASSSLFT ADFAYENELD LSSLITPSTF IPFQEPNPSI PTIHCAGAEN DGRQRIRETT  60
TTDEITNEDV EPKNKKAKRR EIERQRRQEV TSLFKNLRYI LPSQYIKGKR SSSDHVQEAV  120
NYIKDLEKKI KEISEKRDRI KRSISHSSST GECSIRSLES SYCSCDGYTH IDVKVRTCLV  180
GIEIVASCCF TQESCLSSIL QLLIQEQCLD VVSCISSRLH PRFIHTIVCE SMAEESPLVL  240
VHRPPTMKYM DEPLTRYYRI LTTHTSSDPL PVFLSRHASS VRAVVSIGRF KIDADFLSRL  300
PSLQLIVCTS VGTDHVDLPE CNRRGIAVTN AGGAYSEDVA DYAVGLLISF LRRIPAADRY  360
VRSGKWARCG EFQLGIKLSG KRIGILGLGS IGSLIAKRLE PFGCIISYNS TRQKQSIPYL  420
YYPDVVSLAA NNDVIVLCCA LNDQTRHIVN REVMEALGKK GIIINVGRGG LIDEKEMVKC  480
LVEGVIGGAG LDAFEKEPGV PVELFGLDNV VLSPHCAIAT PGSFDNVVEL ALANLKAFFS  540
NQPLISPVRL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ba1_A2e-8824554831332Hydroxyphenylpyruvate reductase
3baz_A2e-8824554831332Hydroxyphenylpyruvate reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate. {ECO:0000269|PubMed:21205613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00090396001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602816.10.0PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like
SwissprotQ9LE331e-167HPR3_ARATH; Glyoxylate/hydroxypyruvate reductase HPR3
TrEMBLA0A078FNK10.0A0A078FNK1_BRANA; BnaC08g41130D protein
STRINGA0A087HN190.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.13e-83bHLH family protein
Publications ? help Back to Top
  1. Timm S, et al.
    A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis.
    Plant Cell, 2008. 20(10): p. 2848-59
    [PMID:18952776]
  2. Timm S, et al.
    The hydroxypyruvate-reducing system in Arabidopsis: multiple enzymes for the same end.
    Plant Physiol., 2011. 155(2): p. 694-705
    [PMID:21205613]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]