PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00089891001

Common Name

GSBRNA2T00089891001, LOC106358058

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 328aa MW: 35356.4 Da PI: 10.0283

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00089891001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	4e-38	47	107	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ GSBRNA2T00089891001 47 QQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 107 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.6E-33	50	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	51	105	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-27	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MFGNCDQKKK MPSISSPNTN PLAIMQSKNM IVAPSHQQQQ QQQAHQQQPQ LKCPRCDSSN 60 TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY RKNKRVKRPA TAASTVSKTT 120 SSSPNHQISH FSSMNHHPML YGLSDHVSSC NSLPMIPSRF NDSSKTSSSG LESEFFSSGF 180 SGLGALGLGF PHHMSHDHTA INGGFINNST ANKPFLLSGL FGSSVSSSSS SHLQHPHKAM 240 NNGGEMMGQS HLQTLASLQD LHVGGNNEDV NKLGKLGQIS GTISGFMSPS SLDPSNSNNI 300 WNNASVVNGG WLDPTNNNVG SSLTSLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00089891001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY299272	0.0	AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653251.1	0.0	dof zinc finger protein DOF1.4 isoform X2
Swissprot	Q9FZA4	1e-144	DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBL	A0A078FTM8	0.0	A0A078FTM8_BRANA; BnaA07g08490D protein
STRING	Bo7g048220.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-123	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106358058

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]