PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00089125001

Common Name

GSBRNA2T00089125001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 216aa MW: 24370.9 Da PI: 9.4292

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00089125001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.2e-31	141	198	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H h GSBRNA2T00089125001 141 LDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHSH 198 59*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-33	126	198	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-28	133	198	IPR003657	WRKY domain
PROSITE profile	PS50811	28.92	136	198	IPR003657	WRKY domain
SMART	SM00774	2.9E-36	141	200	IPR003657	WRKY domain
Pfam	PF03106	6.8E-25	142	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MEGGGRRVVV NNYDLQQVTI QENMNFLIPF EETNVLTFFS SSSSSSLSSP SFPIHNSSST 60 TSTTHAPLGF PNNLQGGGPL RSKVVNDDQD NFRGGINNDA HSSSWWRSSS GSGESKNKVK 120 IRRKLREPRF CFQTKSDVDV LDDGYKWRKY GQKIVKNSLH PRSYYRCTHN NCRVKKRVER 180 LSEDCRMVIT TYEGRHSHIP SDESTSPDHD SLSSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	132	198	8	74	Probable WRKY transcription factor 4
2lex_A	1e-25	132	198	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	KIRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00089125001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ168839	0.0	GQ168839.1 Brassica rapa subsp. pekinensis WRKY12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013752141.1	1e-156	probable WRKY transcription factor 12
Swissprot	Q93WY4	1e-129	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A078IGH1	1e-158	A0A078IGH1_BRANA; BnaC04g05170D protein
STRING	Bra004864.1-P	1e-129	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6045	25	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-111	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]