PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089083001
Common NameGSBRNA2T00089083001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 322aa    MW: 35789.2 Da    PI: 5.9006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089083001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20149198255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  GSBRNA2T00089083001 149 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 198
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-36148208No hitNo description
Gene3DG3DSA:3.30.730.101.2E-32149207IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23149207IPR016177DNA-binding domain
SMARTSM003804.3E-40149212IPR001471AP2/ERF domain
PROSITE profilePS5103223.565149206IPR001471AP2/ERF domain
PfamPF008479.4E-15150198IPR001471AP2/ERF domain
PRINTSPR003672.9E-11150161IPR001471AP2/ERF domain
PRINTSPR003672.9E-11172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MADFFSSSHG GELMEALQPF YKNASTSASD SAFVSSNAAF ASTPNDPFSF SYYNYQPQNI  60
SSFSTTHSDY GSFPDIYPGS MTYPSSFPSN LQKQPDQNYQ AQFHYQNDST YTHQDNHYTL  120
NFVDPNNSDF LTQPDPVPSS GSVPKPSKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD  180
TAEEAALAYD RAAFKLRGDS ARLNFPALRY QTGSSPSDIG EYYGPIQAAV DAKLEAIFAE  240
PKNQPGKKER TSRNRAKATP SSIDHSTPQQ QSRPGESDGS GSPPSDMKAL EMCVETPIPW  300
NDNFILGKCP SYEIDWASIL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21148213469ATERF1
3gcc_A1e-21148213469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089083001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124887.10.0PREDICTED: ethylene-responsive transcription factor ERF055
SwissprotQ9SKW51e-149ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A078IDT30.0A0A078IDT3_BRANA; BnaAnng09570D protein
TrEMBLA0A397ZID80.0A0A397ZID8_BRACM; Uncharacterized protein
TrEMBLM4FH030.0M4FH03_BRARP; Uncharacterized protein
STRINGBra040381.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-120ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]