PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088960001

Common Name

GSBRNA2T00088960001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 172aa MW: 19102.9 Da PI: 5.0493

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088960001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	3.9e-31	110	168	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C++ gCpvkk+ver+++dp++v++tYe+ Hnh+ GSBRNA2T00088960001 110 LDDGFKWRKYGKKMVKNSPNPRNYYKCSTDGCPVKKRVERDRDDPSFVITTYESFHNHS 168 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-33	96	169	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-28	103	168	IPR003657	WRKY domain
PROSITE profile	PS50811	29.815	105	170	IPR003657	WRKY domain
SMART	SM00774	3.2E-36	110	169	IPR003657	WRKY domain
Pfam	PF03106	7.4E-25	111	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MNDAETNLAR SFSDDTHSGL DLQDLYLSDE WMDDDLASAV SGMNQSYPYQ TSDAAAFFFG 60 SSSSLGQPES SSTNASAATA TASAENQVKK ENKKVKERVA FKTQSEVEVL DDGFKWRKYG 120 KKMVKNSPNP RNYYKCSTDG CPVKKRVERD RDDPSFVITT YESFHNHSSM T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-27	100	167	7	74	Probable WRKY transcription factor 4
2lex_A	7e-27	100	167	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088960001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596728.1	7e-92	PREDICTED: probable WRKY transcription factor 50
Refseq	XP_022561792.1	7e-92	probable WRKY transcription factor 50
Refseq	XP_022561862.1	7e-92	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	1e-87	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A078IDU6	1e-124	A0A078IDU6_BRANA; BnaA06g16820D protein
STRING	Bo7g095430.1	3e-91	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	6e-70	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]