PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00088680001 | ||||||||
Common Name | GSBRNA2T00088680001, LOC106423620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20742 Da PI: 8.0996 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.7 | 9.7e-39 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++r+kC+++C+lapyfp+e++++f n+hklFG+sn++k++k ++e +r++am+ l+++A+arardPv G+++++l+l++q++++ GSBRNA2T00088680001 19 ACAACKYQRKKCTEHCILAPYFPQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDIAMTNLMFHANARARDPVWGVCKIMLDLKNQIACT 108 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +ael+l++++ GSBRNA2T00088680001 109 QAELNLIHQQ 118 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 20 | No hit | No description |
PROSITE profile | PS50891 | 24.226 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-35 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSLSKFHGGS SSCSSSATAC AACKYQRKKC TEHCILAPYF PQEKQNQFLN AHKLFGVSNI 60 TKFIKGVEEC QRDIAMTNLM FHANARARDP VWGVCKIMLD LKNQIACTQA ELNLIHQQNL 120 AMCRTIALQQ QFGCYSYGDL GDEYLNIDGH VHQKQSLLNY EMFMEMPIKL EKEKVSMDTR 180 MQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-26 | 9 | 120 | 1 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-26 | 9 | 120 | 1 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00088680001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013719850.1 | 1e-136 | LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 1e-60 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A078IFX0 | 1e-135 | A0A078IFX0_BRANA; BnaA02g16210D protein | ||||
TrEMBL | A0A3P6AGV8 | 1e-135 | A0A3P6AGV8_BRACM; Uncharacterized protein | ||||
STRING | Bra008062.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 2e-55 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 106423620 |
Publications ? help Back to Top | |||
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