PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086680001
Common NameGSBRNA2T00086680001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 343aa    MW: 38851.9 Da    PI: 4.401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086680001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19121170255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp +   ++r +lg+f taeeAa  +++a+ +l+g
  GSBRNA2T00086680001 121 KFRGVRQRP-WGKWAAEIRDPEQ---KRRLWLGTFETAEEAAVVYDNAAIRLRG 170
                          89*******.**********732...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-30120178IPR001471AP2/ERF domain
PROSITE profilePS5103223.828121178IPR001471AP2/ERF domain
PfamPF008477.1E-12121170IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21121179IPR016177DNA-binding domain
CDDcd000187.58E-34121177No hitNo description
SMARTSM003801.6E-39121184IPR001471AP2/ERF domain
PRINTSPR003674.2E-10122133IPR001471AP2/ERF domain
PRINTSPR003674.2E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNMMDEELHE YMDFRPLKYS EHKTSVTKYT KASPETRPDS VRIVRVSVTD PYATDSSSDE  60
EEEDFLFPRR RVRRFVNEIK VEPGCNNTGV SMKERKRLSS PASNRHRPLK VSTSSGQNVR  120
KFRGVRQRPW GKWAAEIRDP EQKRRLWLGT FETAEEAAVV YDNAAIRLRG PDALTNFSVP  180
PQSQEDSEPK PVIDKPESNI TTTITTSSTE STEDFQHVSS PTSVLNLQSS SEEIQQPFKS  240
AKPEPEISDA SWCHTGFSSG SGESEDSFML DSTFLDNYFN ESTPEFSILD QPMGQLFLEN  300
DVFSDTFLDE EIMMNIGDEF TKDIGSVFSE FDDSLISDLL VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21120185470ATERF1
3gcc_A1e-21120185470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086680001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570525.10.0ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-135CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLA0A078IB580.0A0A078IB58_BRANA; BnaA03g12320D protein
STRINGBra029079.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-120cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]