PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086340001
Common NameGSBRNA2T00086340001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 709aa    MW: 74131.6 Da    PI: 10.2792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086340001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-11190234144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                          r++W++eEde l+ avk++G g+W tI+++     Rt  q+  rw
  GSBRNA2T00086340001 190 RKKWSAEEDEELIAAVKRHGEGSWVTISKEEFeGERTVSQLSQRW 234
                          789*************************98666678888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.21185242IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-13186235IPR009057Homeodomain-like
SuperFamilySSF466891.58E-11187240IPR009057Homeodomain-like
SMARTSM007178.8E-10189240IPR001005SANT/Myb domain
PfamPF002493.8E-8190234IPR001005SANT/Myb domain
CDDcd116602.31E-11191234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MIDRKRKEFI SEEDMATLLQ RYDTMTILKL LQEMAYYAEP KMDWNEMLKK TSTGITNARD  60
YQLLWRHLAY RDSLLPVDDN ALPLDDDSDM ECELETSPAV NVDVVSEAVA HVKVIASSFV  120
PSDLDIPEDS TFEAPLTINI PYGHRGPQEP SDSYWSSKGM NITFPISLQK AAEGHNGNGL  180
ASSVAARKKR KKWSAEEDEE LIAAVKRHGE GSWVTISKEE FEGERTVSQL SQRWGFLRKR  240
GDTSNSSTQS GLHRTEEQMA ANRALSLAVG NRVPSKKAAV GIPPVRTSGT ITGAQANGAN  300
NGNSLQGQQQ SQPVVQATPR VATSIPTTKS RVPAKKTTAN STSRSALMVT ANSVAAAACM  360
SGLATTASVP KVEPVIKASP AAASFPRPSA ISSALNAEPV KNASPSATSF PRPSGISSAL  420
NAERVKAASA ASFPRPSGIS SAPNVVPVKT ASAAILPRPL GVISASKAEP FKTAPVAFLP  480
RPSRTISAPN AEAVKAASAV SLPGPSSIIS ASKAEPVKSV AAAGPSNVRN AVTGSPRHVL  540
SSSPMAPFSK GPTIQNNPSP GFASSRLAPT QRVPAANVIP QKPNAGAGVT ATCKPVGVQT  600
QGNRANPMVT PTLQSNKAIS TNSVITTAKP VAAKVETPSL LPKHTQVPQT EVGSGTEKSS  660
LARPSEKESS TTVSPLVVAE AESKSKGEES KGKSPDVATV TGTEKKGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086340001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672238.10.0cell wall protein AWA1-like isoform X1
TrEMBLA0A078ICA70.0A0A078ICA7_BRANA; BnaC01g27820D protein
TrEMBLA0A3P6F1520.0A0A3P6F152_BRAOL; Uncharacterized protein
STRINGBo1g087910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]