PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086242001

Common Name

GSBRNA2T00086242001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 679aa MW: 75827.8 Da PI: 8.351

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086242001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.6	1.2e-32	3	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r+t++gyW + g d+ GSBRNA2T00086242001 3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALQEGRQWYFYSRKT--------QERVTSNGYWGSMGIDE 83 79***********************999.99***********77778899*9975........5799********* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ ++++vg+k+ L+fy g++ +t+Wvm+ey+l GSBRNA2T00086242001 84 PIFTSsTHKKVGIKNYLTFYLGDS----QTNWVMQEYSL 118 99867888********7654....68*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-41	1	153	IPR003441	NAC domain
PROSITE profile	PS51005	41.31	3	153	IPR003441	NAC domain
Pfam	PF02365	2.3E-20	4	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALQEGRQWY 60 FYSRKTQERV TSNGYWGSMG IDEPIFTSST HKKVGIKNYL TFYLGDSQTN WVMQEYSLPD 120 SSSRSSKRSN HGSTSSTHKP DYSKWVICRV YEQNCSDEED DDGAELSCLD EVFLSLDDLD 180 ESANIKKSPL LPFIDAGGVL GRRRQACAYL SLSMILLLSV LIIFSSFCVF ISVLTVALFD 240 TGTSLWRLFI GMCWRPFRGT VLTGFGSLWR TPLHSVLRST FNHRAYASNP WIYFPESYPH 300 GSAPHQPDPP SSLACCLPRV SVVSTSCSSL VVVSTATINT PSQTDISSRR QLGVEDGSCW 360 LSCYRSARSV IFRGIPLTVS PPFTSTHKPS PPPSPSVLVL KHLLPLRESD SFRHATPPHV 420 SSTPVDRRSP AFLLSPNQNR SFTWRYTELD NPTYRRRCSV HFELDHKVMR LGLVDPTALD 480 DLLVSPTVSR PMLLWGMLIF LINFLKISDG FIGIFTETYL HTMRHLSFMK KLQPFHSPVD 540 SPGLSSLSSL ASFSSEKRSV LSPVSFSKSV FPLNVKWRYM PISIIVCLSC GAVRSGPEDA 600 TDFISTVFRG ADWVSTSHKV TISQVSGIAM KLASTPSSFS LSSLSTYLRG FSISIAYVVS 660 SFVCRVCLNS FLLCSSNV*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALQEGRQWY  60
FYSRKTQERV TSNGYWGSMG IDEPIFTSST HKKVGIKNYL TFYLGDSQTN WVMQEYSLPD  120
SSSRSSKRSN HGSTSSTHKP DYSKWVICRV YEQNCSDEED DDGAELSCLD EVFLSLDDLD  180
ESANIKKSPL LPFIDAGGVL GRRRQACAYL SLSMILLLSV LIIFSSFCVF ISVLTVALFD  240
TGTSLWRLFI GMCWRPFRGT VLTGFGSLWR TPLHSVLRST FNHRAYASNP WIYFPESYPH  300
GSAPHQPDPP SSLACCLPRV SVVSTSCSSL VVVSTATINT PSQTDISSRR QLGVEDGSCW  360
LSCYRSARSV IFRGIPLTVS PPFTSTHKPS PPPSPSVLVL KHLLPLRESD SFRHATPPHV  420
SSTPVDRRSP AFLLSPNQNR SFTWRYTELD NPTYRRRCSV HFELDHKVMR LGLVDPTALD  480
DLLVSPTVSR PMLLWGMLIF LINFLKISDG FIGIFTETYL HTMRHLSFMK KLQPFHSPVD  540
SPGLSSLSSL ASFSSEKRSV LSPVSFSKSV FPLNVKWRYM PISIIVCLSC GAVRSGPEDA  600
TDFISTVFRG ADWVSTSHKV TISQVSGIAM KLASTPSSFS LSSLSTYLRG FSISIAYVVS  660
SFVCRVCLNS FLLCSSNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	1	159	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	1	159	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	1	159	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	1	159	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	1	159	18	174	NAC domain-containing protein 19
3swm_B	1e-33	1	159	18	174	NAC domain-containing protein 19
3swm_C	1e-33	1	159	18	174	NAC domain-containing protein 19
3swm_D	1e-33	1	159	18	174	NAC domain-containing protein 19
3swp_A	1e-33	1	159	18	174	NAC domain-containing protein 19
3swp_B	1e-33	1	159	18	174	NAC domain-containing protein 19
3swp_C	1e-33	1	159	18	174	NAC domain-containing protein 19
3swp_D	1e-33	1	159	18	174	NAC domain-containing protein 19
4dul_A	1e-33	1	159	15	171	NAC domain-containing protein 19
4dul_B	1e-33	1	159	15	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24529	1e-127	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086242001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966746	0.0	KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078IBS6	0.0	A0A078IBS6_BRANA; BnaC02g43170D protein
TrEMBL	A0A3P6D8I0	0.0	A0A3P6D8I0_BRAOL; Uncharacterized protein
STRING	Bo2g166280.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-88	xylem NAC domain 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]