PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085984001
Common NameGSBRNA2T00085984001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 137aa    MW: 15304.6 Da    PI: 10.2511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085984001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.8e-1572121154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          +++kGVr+++ +g+W AeI+dps +    r +lg+f ta++A ka++ a+ kl 
  GSBRNA2T00085984001  72 TKHKGVRQKP-SGKWSAEIWDPSLQ---GRRWLGTFPTAKMAGKAYDDAAAKLV 121
                          69******99.7*********9653...688*******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-2172132No hitNo description
PfamPF008472.3E-872121IPR001471AP2/ERF domain
PROSITE profilePS5103218.09773134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-1973124IPR001471AP2/ERF domain
SMARTSM003803.3E-2073136IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1373123IPR016177DNA-binding domain
PRINTSPR003671.6E-57485IPR001471AP2/ERF domain
PRINTSPR003671.6E-596112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDHSENIPSC DRKPPRLTRD QEHVIMVSAL RQVISNVRAL HQPLEAGPCP LCGITGCYGC  60
AFPRREEIKK ETKHKGVRQK PSGKWSAEIW DPSLQGRRWL GTFPTAKMAG KAYDDAAAKL  120
VKRKKARRGT TNEEEP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085984001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137617.16e-95PREDICTED: ethylene-responsive transcription factor ERF120-like
RefseqXP_013741557.16e-95ethylene-responsive transcription factor ERF120-like
SwissprotQ9SK676e-58EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A078I9Z56e-97A0A078I9Z5_BRANA; BnaA03g48270D protein
STRINGBra019087.1-P2e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.13e-54ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]