PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085414001
Common NameGSBRNA2T00085414001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 426aa    MW: 48033.8 Da    PI: 5.8905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085414001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.2e-3341322127
                  NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 
                          p+G+rF+Ptdee+vv+y ++k +e+++ +++ev+++vdiy+++Pw+L+ k ++k++++  wyfF ++++    ++r++r++ sg+W++tg
  GSBRNA2T00085414001   4 PVGYRFRPTDEEIVVHYVRPKnIESNTSHVDEVMNTVDIYSFDPWELRfKsRIKSRDEvVWYFFGCKKRMR--NNRQRRTIPSGFWSNTG 91 
                          89*****************99567777889999**************85247777766799***9998875..569************** PP

                  NAM  88 kdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++k++++k     ++e++g k++  f k  +++ +k+dWvmhey 
  GSBRNA2T00085414001  92 ETKPIIRKkggggDHEKIGEKRV--FSK--SKSKSKSDWVMHEYV 132
                          *******9888776777999985..664..344469********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-363156IPR003441NAC domain
PROSITE profilePS5100536.5033156IPR003441NAC domain
PfamPF023651.1E-184132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVDPVGYRFR PTDEEIVVHY VRPKNIESNT SHVDEVMNTV DIYSFDPWEL RFKSRIKSRD  60
EVVWYFFGCK KRMRNNRQRR TIPSGFWSNT GETKPIIRKK GGGGDHEKIG EKRVFSKSKS  120
KSKSDWVMHE YVATFSSPDS QRMTTSTYTV CKVMFKGDPT DLPSSSSLIP QLNSNSSGGL  180
STESEVQNPN QITSSITSSI SSIPHVNNNN SGVLSTETEV DPRLFSGFLY LEEDAHFEDE  240
TLRDLNSLPN NDDAEEEEWL VNLWSMQGDR NDHRPKMPLT GFISDDDDDD DSDSDSISTK  300
TVPPHKKLKV LFHMIWQCSI KSSSTCVTFG NSNRLIDQII DLPESPRSTI ESVSLTQEVS  360
KALGANSAIS EKKMSPCDDD AQVSEIGGDQ MGQEMVIKNK RAGFIYRMIQ KFAKKIKLCS  420
CVSRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-15413116138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085414001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638577.10.0PREDICTED: NAC domain-containing protein 5-like isoform X5
RefseqXP_013638578.10.0PREDICTED: NAC domain-containing protein 5-like isoform X6
TrEMBLA0A078FQ060.0A0A078FQ06_BRANA; BnaC05g01000D protein
STRINGBo5g002910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.17e-89NAC domain containing protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]