PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085411001
Common NameGSBRNA2T00085411001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 366aa    MW: 41678.6 Da    PI: 7.5674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085411001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.91.9e-271512118127
                  NAM  18 yLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglk 103
                          ++ k++ g++ +++++i++vdi+++ePw+Lp k + +++++ wyfF ++++ky++g+r++r+tks++Wk+tg ++++++k  ++e++g k
  GSBRNA2T00085411001  15 WMLKNLGGDTSHVDKAISTVDICSFEPWELPsKsRRESRDQIWYFFGRKENKYNRGERQSRITKSAFWKKTGVTTNIIRKrgNREKIGEK 104
                          6677788888999899***************433445577799***********************************99777888**** PP

                  NAM 104 ktLvfykgrapkgektdWvmheyr 127
                          ++Lvf+       ++++Wvmhey 
  GSBRNA2T00085411001 105 RVLVFH-------SNSEWVMHEYV 121
                          ******.......3689******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.6741140IPR003441NAC domain
SuperFamilySSF1019415.89E-2819140IPR003441NAC domain
PfamPF023657.3E-1141121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQAPRWTDLS CNLDWMLKNL GGDTSHVDKA ISTVDICSFE PWELPSKSRR ESRDQIWYFF  60
GRKENKYNRG ERQSRITKSA FWKKTGVTTN IIRKRGNREK IGEKRVLVFH SNSEWVMHEY  120
VSTFLSPTQT TYTVCKVIFK GDPRDLPSSS APGGGGGEVE HNHSQFTHMN NSGEFEGLQN  180
QRHFTGLLDA EKETQIHDAL CRGLDSVSTH DLNSFINCGN NDEEEHVNLL FMHENRNDYR  240
PKISLTGFID HSDDEDSDSD LISATTTVSL ILLCFGSSNR RIDQITDLQN SPNSTTKLIS  300
PTQVRKTSLD ASKEKSDVQG NEMGEYYKMD QEVINKKRGS FFYRKIRSCI KKTLLCSSIP  360
PTPRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-143112049140NO APICAL MERISTEM PROTEIN
1ut4_B3e-143112049140NO APICAL MERISTEM PROTEIN
1ut7_A3e-143112049140NO APICAL MERISTEM PROTEIN
1ut7_B3e-143112049140NO APICAL MERISTEM PROTEIN
4dul_A3e-143112049140NAC domain-containing protein 19
4dul_B3e-143112049140NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085411001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639072.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819149e-94NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078FSE30.0A0A078FSE3_BRANA; BnaC05g00970D protein
STRINGBra033298.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.13e-91NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]