PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084672001
Common NameGSBRNA2T00084672001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 598aa    MW: 65190.6 Da    PI: 5.2568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084672001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08242262526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C FaHg
  GSBRNA2T00084672001 242 PCPDFRK-GACRRGDMCEFAHG 262
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.02E-1529154IPR020683Ankyrin repeat-containing domain
CDDcd002041.26E-1437150No hitNo description
Gene3DG3DSA:1.25.40.201.9E-1541156IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-1075146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.50279147IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0279107IPR002110Ankyrin repeat
PRINTSPR014151.8E-58095IPR002110Ankyrin repeat
PROSITE profilePS5008812.636112147IPR002110Ankyrin repeat
SMARTSM002480.0054112144IPR002110Ankyrin repeat
PRINTSPR014151.8E-5131145IPR002110Ankyrin repeat
SMARTSM003562.7E-6237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638242264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4242264IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5242262IPR000571Zinc finger, CCCH-type
SMARTSM0035643272295IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.906272296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MCCGSDQLNQ ISSSEDSTTN TEMNHLRVET EDTFASLLEL AANNDVEGVR LSIDRDPSCV  60
DEPGLWYGRQ KGSKAMVNDH RTPLMVAATY GSIDVIKLIL SLTDVNRACG SDQTTALHCA  120
ASGGAVNAVQ VVKLLLAAGA DLNLMDADGQ RAGDVIVDGY GDGESPFKMK SSTEFKKEYP  180
VDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  240
VPCPDFRKGA CRRGDMCEFA HGVFECWLHP AQYRTRLCKD GTGCARRVCF FAHIPEELRP  300
LYESTGSAVL SPRSNADFAA ALSLLPPGSP SGVSVMSPLS PSSGGNGMSS MAWPQPNVPA  360
LQLPGSNLRS SRLRSSFNAR DEMNMLAEYE QQQLLNEFNS SLSRSGRMKS LPPSNLEDLF  420
SAESSSSPRF NDSALASAVF SPTHKSAVFN QFQQQQQQSM MSPRNVVEPI SPMSSRLRTS  480
SSPIVGSPVN NNNNNNAWSS QWGSSNGKPD WGMSSEAALG KLSFDGGVEP DVSWVQSLVK  540
ENPNEAKEKA AATSSNTGQN TMQQPTTTTT SEMVMDHAGL EAWIEQMQLD QFVAQQN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.51550.0flower| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084672001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895680.0AC189568.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636461.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_013687904.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A078FPK10.0A0A078FPK1_BRANA; BnaC04g47990D protein
STRINGBo4g191180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]