PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00084044001

Common Name

GSBRNA2T00084044001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 305aa MW: 34721 Da PI: 4.9464

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00084044001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.8	4.6e-49	13	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+k+ ++kl++ ++i vd+yk++P++Lp + +k+++++w++F++r++ky++ r+ r t++gyWkatgkd GSBRNA2T00084044001 13 APGFRFHPTDEELVMYYLKRKICKRKLRV-NAIGVVDVYKLDPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTATGYWKATGKD 101 69*************************.89**********96347788999***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +++ vglkktLvfy+grap+g++tdWvmhey++ GSBRNA2T00084044001 102 RVISY-NSRSVGLKKTLVFYRGRAPNGQRTDWVMHEYTM 139 99.999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.843	12	162	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-55	13	162	IPR003441	NAC domain
Pfam	PF02365	9.7E-26	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MADSCLRGGK FSAPGFRFHP TDEELVMYYL KRKICKRKLR VNAIGVVDVY KLDPEELPGQ 60 SVLKTGDRQW FYFTPRSRKY PNAARSGRCT ATGYWKATGK DRVISYNSRS VGLKKTLVFY 120 RGRAPNGQRT DWVMHEYTMD EDELGRCKKA KEYYALYKLF KKSGAGPKNG EEYGAPFQEE 180 EWADDDDNDN GDDIDVPVVR CEDNVSLFEP VNVQLDDLEE FLSGIPFAPG VPQTFTSIPQ 240 VNREEELQST LVNNSAREFL KPQETGDFLP NDMPSSYESI DVTSAPNNSV LVFEKEITLK 300 WMTF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-44	14	139	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	38	RKICKRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22987	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269\|PubMed:17158162}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269\|PubMed:24045017}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00084044001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232513	1e-143	AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715106.1	0.0	NAC domain-containing protein 17-like
Swissprot	Q9XIC5	1e-154	NAC17_ARATH; NAC domain-containing protein 17
TrEMBL	A0A078IAW9	0.0	A0A078IAW9_BRANA; BnaA08g06490D protein
STRING	Bo8g027120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2812	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-140	NAC domain containing protein 17

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Van Aken O,Ford E,Lister R,Huang S,Millar AH Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance. Plant J., 2016. 88(4): p. 542-558 [PMID:27425258] Hu Z, et al. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Plant Cell, 2016. 28(9): p. 2276-2290 [PMID:27543091] Chi YH, et al. The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis. Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647 [PMID:28088515] Van Aken O,Pogson BJ Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death. Cell Death Differ., 2017. 24(6): p. 955-960 [PMID:28498364] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]