PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083914001 | ||||||||
Common Name | GSBRNA2T00083914001, LOC106372432, LOC106372452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 353aa MW: 39445 Da PI: 4.7541 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 6 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk++ ++++s +v+p ++ +e ++ +kt l+ ++g W+v + k+++++++++GW++Fv++n L++gD+++F +dg+++f GSBRNA2T00083914001 6 FFKIF--LSHFSSESMVIPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--VKRRDEVYFGQGWSKFVEDNCLRDGDVLTFVYDGSRSF- 90 88888..89999999*********99998..8889****977769******..9999*****************************98888. PP .EEEEE CS B3 92 lvvkvf 97 +v ++ GSBRNA2T00083914001 91 -TVDIY 95 .77665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-20 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.296 | 4 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.64E-17 | 4 | 95 | No hit | No description |
SuperFamily | SSF101936 | 2.55E-21 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-21 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-7 | 251 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-9 | 251 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.012 | 257 | 349 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.047 | 314 | 349 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMVKRRDEVY 60 FGQGWSKFVE DNCLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD 120 DDDDKEDTNT SSEPEMAQTV PNATNQEDSN IVEPEVAQRV PRTRSKGKKR VVVQDSDDSF 180 ISEDSDSLSD SSYSPPNDDT LLDVTPKVAN SRKKGQLRSA NSNVGTTSNS SGSVSRKRQS 240 TIKNPEVYLD DPNNVCFEII LKNRIYELTV PKQIVKDYCL KFQAYVCYID NHESGTLEAR 300 VATWQDQRVS IKKWDRICQR NGLKKGDSLL CELFRKEGLV YAVKIHVVTT AS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 9e-14 | 6 | 96 | 11 | 100 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083914001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013668101.1 | 0.0 | B3 domain-containing protein At4g34400-like | ||||
Refseq | XP_013668124.1 | 0.0 | B3 domain-containing protein At4g34400-like | ||||
TrEMBL | A0A078JUD3 | 0.0 | A0A078JUD3_BRANA; BnaCnng62390D protein | ||||
STRING | Bo1g016660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6555 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 9e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106372432 | 106372452 |
Publications ? help Back to Top | |||
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