PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00083815001 | ||||||||
Common Name | GSBRNA2T00083815001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 125aa MW: 14648.2 Da PI: 10.1787 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.9 | 2.8e-08 | 14 | 96 | 56 | 128 |
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy..............kgrapkgektdWvmheyrl 128 + yfF++r ++ r+ + g W+ +d+ ++sk++++ g k+ + f ++ + + k +Wvm+eyrl GSBRNA2T00083815001 14 EGPYFFVNRTASS---GRTDG-CDGGCWRIMRRDRVIISKRNKVLGFKRLFKFCvkgeaepvykfwadEKYKVNELKVTWVMDEYRL 96 4559999987754...46666.478*****************************9888888887777656777778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.176 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-16 | 15 | 110 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-6 | 17 | 96 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MIVDPDQSSV DLQEGPYFFV NRTASSGRTD GCDGGCWRIM RRDRVIISKR NKVLGFKRLF 60 KFCVKGEAEP VYKFWADEKY KVNELKVTWV MDEYRLAKKK EQGKVICRIR LLFPLPLKCH 120 LKHF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00083815001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013658275.1 | 4e-84 | uncharacterized protein LOC106363008 | ||||
TrEMBL | A0A078I911 | 7e-87 | A0A078I911_BRANA; BnaA09g19800D protein | ||||
STRING | Bra029571.1-P | 2e-80 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18221 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60240.1 | 5e-29 | NAC family protein |
Publications ? help Back to Top | |||
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