PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083285001
Common NameGSBRNA2T00083285001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 605aa    MW: 68417.1 Da    PI: 9.674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083285001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-163023821398
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++rl +pkkf + ++ k    k +tl+++sg +++v l  +  +++   ++ GW +Fvk++ L e D +vFk++g+sef   v +f+
  GSBRNA2T00083285001 302 HNRLAIPKKFSTYCKRK--LAKIVTLKSPSGTKYNVGL--EEDDEKtLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEF--EVLIFD 382
                          789*******9766655..7789***************..777766699***********************9998888..888876 PP
2B358.31.4e-18498595199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                          f+ v+++s+v +++ l++p +  +++++ +++  +++ ++   r+W +k++y +++gr   + GWk+Fv++n+L+egD++vF+    + +
  GSBRNA2T00083285001 498 FLVVMKRSHVVSKCFLYVPVQWSARNMSREPQ--DVV-MQVGERKWHLKFKYYGSKGRGGVSVGWKKFVRDNNLCEGDVCVFEPAkPEaK 584
                          78899*********************988655..566.55689*********99999988999********************5534568 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                           f+l v +fr+
  GSBRNA2T00083285001 585 PFHLDVYIFRA 595
                          88888888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR009951.5E-1251265IPR005692Chloroplast protein import component Tic22
PfamPF042781.3E-10810264IPR007378Tic22-like
SuperFamilySSF1019362.16E-19289383IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.733290384IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-20291382IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-16292382No hitNo description
SMARTSM010199.5E-19293384IPR003340B3 DNA binding domain
PfamPF023627.1E-14302382IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-19496595IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.451498596IPR003340B3 DNA binding domain
SMARTSM010191.8E-19498596IPR003340B3 DNA binding domain
PfamPF023622.2E-16498595IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-19498595IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-20498594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MEPSLKPNPF LSFSSFLHTH CNRFASDLSA RFEDTKRFAE SLTTRRFTPP PFASVSQSPK  60
PSAGTSTATL NPSHVAKALA GTSVFTVSNT NNEFVLISDP TGDKSIGLLC FRQEDAEAFL  120
AQARLRRREL KANAKVVPIN LDQVYLLKVE GISFRFLPDP IQIKNAMELK SSASKNGFDG  180
VPVFQSELLV VRKKNKRYCP VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMERS  240
EKNSGWEDII FIPPGRSYAQ HMQEKKKKME ENCEDCMRWE EQLYWNHFQT VHFSQLLLPG  300
FHNRLAIPKK FSTYCKRKLA KIVTLKSPSG TKYNVGLEED DEKTLAFRCG WDKFVKDHSL  360
HESDLLVFKF NGSSEFEVLI FDGDTLCEKP TSYFVRKCGH AAEKTSRTGT DQEEHSNSDI  420
DTDSGQLPVI SPTSKGPISE GKYPIGVFKK MRGQISINDP DRKADVEMIP GGSRKRIGEI  480
NKKKALSLAK RAVSTKGFLV VMKRSHVVSK CFLYVPVQWS ARNMSREPQD VVMQVGERKW  540
HLKFKYYGSK GRGGVSVGWK KFVRDNNLCE GDVCVFEPAK PEAKPFHLDV YIFRAAEAES  600
SNNG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083285001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138178.10.0PREDICTED: B3 domain-containing protein REM16 isoform X1
SwissprotQ8RYD11e-175REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A078IAA50.0A0A078IAA5_BRANA; BnaA03g52450D protein
STRINGBra037010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM905223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-172B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]