PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00082879001
Common NameGSBRNA2T00082879001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 258aa    MW: 29648 Da    PI: 9.5213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00082879001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.6e-183178148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed+ll ++v+  G g W+++a++ g++R++k+c++rw +yl
  GSBRNA2T00082879001 31 KGPWTPAEDKLLTEYVTSNGEGKWSSVAKCAGLNRSGKSCRLRWVNYL 78
                         79********************************************97 PP
2Myb_DNA-binding48.32.3e-1584128147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
  GSBRNA2T00082879001  84 RGQITPQEEGIILELHFLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 128
                          7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.5792682IPR017930Myb domain
SuperFamilySSF466891.48E-3028125IPR009057Homeodomain-like
SMARTSM007171.9E-143080IPR001005SANT/Myb domain
PfamPF002493.3E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-233285IPR009057Homeodomain-like
CDDcd001671.49E-103378No hitNo description
PROSITE profilePS5129418.2583133IPR017930Myb domain
SMARTSM007175.6E-1383131IPR001005SANT/Myb domain
PfamPF002492.9E-1384128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2386132IPR009057Homeodomain-like
CDDcd001671.81E-988128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLDLGADQVH QLTHDHDPYQ KQQQQLQGFR KGPWTPAEDK LLTEYVTSNG EGKWSSVAKC  60
AGLNRSGKSC RLRWVNYLRP GLKRGQITPQ EEGIILELHF LWGNKWSTIA RYLPGRTDNE  120
IKNYWRTHYK KKDKSFSKQD KFKRSRKQLG MQPQPHNQRS QMVSRNHMNH DNEQNIASSF  180
SYPTSVIHDQ FHMPQSVTAT SSDHSMTDEG NLWGSLWSLN DEDRPHRFGG GWEQRIAADI  240
SEKFNGDRIE APPCGSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24311327107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00082879001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719801e-130AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195931e-130AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129674.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A078I4T40.0A0A078I4T4_BRANA; BnaAnng07760D protein
TrEMBLA0A398AFX50.0A0A398AFX5_BRACM; Uncharacterized protein
TrEMBLM4DW500.0M4DW50_BRARP; Uncharacterized protein
STRINGBra020744.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-118myb domain protein 121
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]