PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00082502001 | ||||||||
Common Name | GSBRNA2T00082502001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31459.6 Da PI: 8.2237 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+++++ g+W++ +++ g+ R++k+c++rw +yl GSBRNA2T00082502001 14 KGPWTPEEDEILVEYINKNSHGSWRLLPKKAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l GSBRNA2T00082502001 67 RGPFTPQEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.308 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.54E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.07E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.995 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.81E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGRKPCCDKK GLKKGPWTPE EDEILVEYIN KNSHGSWRLL PKKAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TPQEEKLVVQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRMLSMG 120 LDPKTHEPLP SHGLAKQASA SQTTRHMAQW ESARLEAEAR LSRESMLFNP SCEVKYECDH 180 FLRIWNSEIG ESFKNLTTTS QSPCSRTTSS SSALVGKETV MGINHGSGSS SPCSNNVQDV 240 SSDSALQLLL DFPISDDDMS FLEENIGSSY TESHVGVSIN GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00082502001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591018.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9M2D9 | 1e-158 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A078I984 | 0.0 | A0A078I984_BRANA; BnaCnng13680D protein | ||||
STRING | Bo6g077600.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6982 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-149 | myb domain protein 17 |
Publications ? help Back to Top | |||
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