PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00081763001 | ||||||||
Common Name | GSBRNA2T00081763001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 28791.9 Da PI: 6.2945 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.1e-19 | 130 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+++AeIrdp+ r +r++lg+f tae+Aa+a+++a+ ++g GSBRNA2T00081763001 130 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 179 8********.**********83....57*********************987776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-12 | 130 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 130 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 130 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 130 | 188 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-11 | 131 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-32 | 131 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.65E-21 | 131 | 187 | No hit | No description |
PRINTS | PR00367 | 1.4E-11 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MHYPNNIRPE FVGAPASERD STRNRYQQKE QLSPEQELSV IVSALQHVLS GEKETTPYQG 60 FSSNSTVISA GMHSDTCQVC RIDGCLGCNY FFAPNQRIEK KQQVEVEEGS TVVAAAATGK 120 IRKRKNKKNG YRGVRQRPWG KFAAEIRDPK RATRVWLGTF ETAEDAARAY DRAAIGFRGP 180 RAKLNFPFVD YTSATTSSSV PAEDTRTNAS ASVSAVDSVE AEQWRGGEGG DCDMEEYLKM 240 VMDFGNGDSS DSGNTIADMF Q* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-25 | 127 | 188 | 2 | 64 | ATERF1 |
3gcc_A | 5e-25 | 127 | 188 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.11968 | 1e-88 | flower |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00081763001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189529 | 8e-71 | AC189529.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013689944.1 | 1e-177 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 1e-106 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A078I362 | 0.0 | A0A078I362_BRANA; BnaA03g52830D protein | ||||
STRING | Bra017656.1-P | 1e-174 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-96 | redox responsive transcription factor 1 |