PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00080951001

Common Name

GSBRNA2T00080951001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 196aa MW: 22415.3 Da PI: 8.4846

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00080951001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.2e-10	74	132	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r +rk NRe+A+rsR +K++ ++e +L+ +N++Lk++l+ + ++++ k+e+ GSBRNA2T00080951001 74 RRKKRKSLNRESAKRSRVKKQKHLDEISIQLNQLKIQNRKLKNQLQYIYYHCQRTKMEN 132 78999999**********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.1E-9	66	126	No hit	No description
SMART	SM00338	2.6E-7	70	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.254	72	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-8	74	123	No hit	No description
Pfam	PF00170	3.2E-7	74	132	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.26E-14	75	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MSTISPVFSC EPGLTAPVQA SESGFTSWDI SHLFSFLDSS STNIIPDSAS EYLRPGSVNR 60 TGSNVDLADC TDERRKKRKS LNRESAKRSR VKKQKHLDEI SIQLNQLKIQ NRKLKNQLQY 120 IYYHCQRTKM ENDRLRLEHR MLHDTLLNVR QVLMLCQIES PWIESSSECA TWSYDNSTVV 180 TVQQDPSVIT NHVIV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	94	RRKKRKSLNRESAKRSRVKKQK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00080951001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013629467.1	1e-136	PREDICTED: ocs element-binding factor 1-like
TrEMBL	A0A078JQ12	1e-143	A0A078JQ12_BRANA; BnaCnng60880D protein
STRING	Bo1g080160.1	1e-135	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	2e-69	basic leucine-zipper 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]